Gene detail

Detailed information of OS493_025839-T1 in Lophelia pertusa

Genomic Location: scaffold_130:123566...127696
NR annotation: KAJ7371377.1, LHFPL tetraspan sub member 5 protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZZL8	LHFPL tetraspan subfamily member 5 protein OS=Gallus gallus OX=9031 GN=LHFPL5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010449 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10242 all species →	L_HMGIC_fpl	Lipoma HMGIC fusion partner-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019372 all species →	Family	Lipoma HMGIC fusion partner-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12489 all species →	LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007605 all species →	Biological Process	sensory perception of sound	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23893	LHFPL; LHFPL tetraspan subfamily member protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025839-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

31.9Max TPM

6.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.63	6.74
polyp at pH7 6	18	16	3.47	6.77
coral polyp · control treatment	16	16	11.11	22.48
coral polyp · oil and dispersant treatment	16	16	8.61	28.46
coral polyp · oil treatment	16	16	9.00	31.95
coral polyp · dispersant treatment	16	16	6.37	25.35
Polyp	10	9	2.78	9.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.93
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.63
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.18
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.76
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.83
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.71
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.19
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.