Gene detail

Detailed information of OS493_025845-T1 in Lophelia pertusa

Genomic Location: scaffold_130:175693...181303
NR annotation: KAJ7371383.1, hydrolase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V8V2	m7GpppN-mRNA hydrolase NUDT17 OS=Danio rerio OX=7955 GN=nudt17 PE=2 SV=1
Q5M8V2	m7GpppN-mRNA hydrolase NUDT17 OS=Xenopus tropicalis OX=8364 GN=nudt17 PE=2 SV=2
Q5PQ04	m7GpppN-mRNA hydrolase NUDT17 OS=Xenopus laevis OX=8355 GN=nudt17 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007176 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00293 all species →	NUDIX	NUDIX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020084 all species →	Conserved_site	NUDIX hydrolase, conserved site	Interproscan
IPR020476 all species →	Domain	NUDIX hydrolase	Interproscan
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR050241 all species →	Family	NAD-capped RNA hydrolase NudC subfamily	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42904 all species →	NUDIX HYDROLASE, NUDC SUBFAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006734 all species →	Biological Process	NADH metabolic process	Interproscan
GO:0006742 all species →	Biological Process	NADP catabolic process	Interproscan
GO:0019677 all species →	Biological Process	NAD catabolic process	Interproscan
GO:0035529 all species →	Molecular Function	NADH pyrophosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025845-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025845-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

26.7Max TPM

11.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.32	20.55
polyp at pH7 6	18	17	11.63	19.23
coral polyp · control treatment	16	16	12.36	24.05
coral polyp · oil and dispersant treatment	16	16	8.93	20.42
coral polyp · oil treatment	16	16	13.49	22.55
coral polyp · dispersant treatment	16	16	9.27	26.72
Polyp	10	9	10.71	21.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.55
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.54
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.76
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.15
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.40
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.03
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.03
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.53
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.29
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.89
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.