Gene detail

Detailed information of OS493_025894-T1 in Lophelia pertusa

Genomic Location: scaffold_130:769692...774857
NR annotation: KAJ7371428.1, OCIA domain-containing protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006412 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07051 all species →	OCIA	Ovarian carcinoma immunoreactive antigen (OCIA)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040187 all species →	Family	OCIA domain-containing protein 1/2	Interproscan
IPR009764 all species →	Domain	Ovarian carcinoma immunoreactive antigen domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13336 all species →	OVARIAN CARCINOMA IMMUNOREACTIVE ANTIGEN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025894-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025894-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

23.1Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.18	11.71
polyp at pH7 6	18	18	7.77	11.09
coral polyp · control treatment	16	16	10.08	23.11
coral polyp · oil and dispersant treatment	16	16	6.02	16.36
coral polyp · oil treatment	16	16	8.75	19.62
coral polyp · dispersant treatment	16	16	6.09	15.00
Polyp	10	9	3.79	10.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.59
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.98
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.11
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.71
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.