Gene detail

Detailed information of OS493_025931-T1 in Lophelia pertusa

Genomic Location: scaffold_131:37769...50675
NR annotation: KAJ7356180.1, hypothetical protein OS493_025931 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_025931-T1

ATGGCGGCCCTGAAGCACGGCTCACGAAAGTTTTACGATATTCCAAGCGAAGAATTAACAAATGTAAGGCACACATTTACTGTCAAGAAAGAAAGAAATACAGGGGAACTCCTCAATTATATCGAAGAAAGTTGTATTGGAAAAGATGTAACGTTTTCTGGGCCATACGGTCTACGAAAAGTGACTTATTGTGACTACACAGCATCTGGAAGATCATTATCATTTATTGAGGATTACATAAGAGAGCAGGTGTTACCTCACTATGGCAACACGCACACGACTACAACTGTGACCTCCCTGCAAAGCACTTTGTATCGTCATGAAGCAAGGGATATCATCAGAAATGCAGTGAATGCCAGTGAGAGTGATTCTGTAGTATTTGTTGGAAATGGTGCGACAGGAGCAGTTCACAAGTTGATTCATGCACTGGACTTCAAACAACCTCCAATAGTGTTTGTCGGACCATTTGAACATCATTCAAACCTTCTCCCTTGGAAAGAATTAGGAGCTGAGGTTATATGGATCAAACAAAACTCAAAAGGCTTAGTTGACTTACCTGACTTGGAATTCAAACTTAGGCTTCACTCTTCACAAGGCAGGCAGCTGATTGGCTGTTTCTCTGCGGCATCCAATGTGACAGGTATCTTAACAGACACCAATGCCATCACTGCTTGCTTGCACAGACATGGTGCTCTGGCCTTCTGGGACTACGCCACTGCAGGTCCTTACGTGGACATCAACATGAATCCTTTGGTAACCAGTGATGACCAGGGACTTGTCTACAAAGATGCAATGTTTATTTCAATGCACAAGTTTGTGGGTGGAGTAGAAACGCCAGGCATCCTTGTAGCCAAGAAAACTCTGTTTGTTAATCCTGTTCCCTCAGGTTGTGGCGGTGGTTCTGTGTTTTTTGTAACAGAGAACTCTCACAGATACCTAAAGGAGATTGAGATGAGAGAGGAAGCTGGTACACCAGCCATTGTCGGGGCCATTAGAGCTGGACTTGTCTTCCAACTTAAACAGGAAATCGGCTCAGCTGTTATTATGGCCAGAGAGGATGAATTATGCAGGAGAGCAGTGGCTTCATGGACCAACAGCAGTAATCTTGTTCTTCTGGGGAACACGTCAGTCTCTCGGCTTCCCATTTTCTCCTTCCTCATCAGGCACCCAATCGCTGGGGTGTTCTTACATCACAACTACGTGTGTGCCCTGCTTAATGATCTGTTTGGAATACAGGCCCGTGGAGGCTGCGCTTGTGCCGGCCCCTATGTACAGAATCTTTTGGGAATAAATGAGCAACTGGCAAAAGAGATTGAAGATCTCTTATTGGAGGACAGTCGTTTGGACAGAGTTCATCTGCGGCGATATCACGAATATTCCGAACGAGAAATTTTACGACCAGGCTTTGTGCGTCTTAATTTGCCGTACTTCATGTCACACGATGCTGTTGAGTTTGTTTTGAAAGCAGTGCAGATGGTGGCGGAACATGGATGGAAACTACTTCCACAGTACATGCTTAACCCTGAAACTGGAGAATGGAAACACAGAAAACATCAGGTGTTTCGTGACCGGAAGTGGCTTGGTTCAATCTCATATTCAGAGGGTCACATGACTTACCCATCATCCTCTCTGATCACAGAAGAAACTCCAAGCTCTTACACGGAGTGTCTCTCTGAAGCTGAGGAAATATTTCGTAAAGCAGCTACAAACAGGATTATTAACAGCGTTGGTGATCAGACGTTACTGTTTGGCGAAAAAGGTGAAAAAATGCGTTGGTTTTTACTTCCCAGTGAAGCAGCGCAACTGTTAAGTGGGAAAAATCCCGCGCACTTTCCAATGACAGCACCGTTTACTCCACCACAATGGAAGACTGGTACGCATGTTTCAGAAGGAACTAATCTCAGTGGGGCCGCTTGCATGGATCCTTGTGATAAGACTTGTATTAGTACTGATGAAAAATGCTCCTCGAACTTGACAGACAATTTCAAAGGAAATGAACACGATGCAGTCAGAAGCGTTGTGGATTGTAGTTGTAATGTTAATGGACAAATCGGTGTTACAAACTCAGACGATTTGACTTTTAATGGTGAAAAATGCAATAACTGCGGAGATAGGGATTTGTCTACACCTCAGTCTCTGGGTAACATTATAAACTTGGTGACAAATAGAGACGCTAATTCTCTCGAGACTGACAAATGTAATTCTGCAGAATTCGAAGCTGATAATGCGCATATAAGACATAGAGAGAGCGTTGTGTCTGTGCAAGGAAGGACTTGTGGGATATCATCGGTAGAGACTGGTTATTGTGACTTTTCCAAGAAGGAAAAATCAATTATTGAAAATCTCACAACAAATGATGAACCTTTATCGAATGAGTTTGAGAAGGAACCTGCCTCTTCTGGTGACATTGAGGCAGCGAGGAAAGCATACTATAGCGCTGACCCGAGCTCAATTACAAATACTTCTTCTGAAGACAAGGTGACTTCTGGAGACAGCGATACTGTTGCAGATTCACAAACTGTTTGTAGAAGGAAACTGAGAAAGAAAAAGCCCAGTGAAATTACATCTGCTGGTAAACCGCAGTTTCATCACCCGCCAAAGAGCATCTTCAAACCAACTGTACAGGCCTTAGAAGAATACGACATGATTCGTGATGGCGATCGAGTGATGGTTTGTCTGTCTGGAGGCAAGGACTCGCTCTCTCTACTGCACACCTTACATCAATATCAATTTTACAGTAAATCTAAGGGTGTTAGTTTTGAACTAGGAGCGGCCACTGTGGACCCTCAGTCACCAGGATATGACCCTAAACCTCTGGTCCACTATTTAGAGGCCCTTGATGTTCCTTACTTCTTTGAAGAGCAGGGCATCATTCAACAGGCAGCCCAACTTAGTGTTTGTGAGTCAATATGCAGTTTCTGTTCACGAATGAAGCGTGGTCGGTTGTACGCATGCGCCAGACGTGAAGGATACAACGTGTTAGCTATGGGGCAACACTTAGATGACTTGGCCGAGAGCTTTTTGATGTCAGCATTCCATAATGGTCTCTTGCGAACAATGAAGGCGAACTATACAGTCTTGGAAGGTGACTTGCGAGTTATTAGACCTTTAGTTTACGTTCGCGAGAAAGAACTACGAAGCTTTGCAGAAAAGGTAAAACTGCCCGTGATAGCGGAGAATTGTCCTGCATGTTTTGAAGCACCTAAGGAGCGCCATCGAACAAAGCAGTTGCTTGCAACTCAGGAAATATTGTTCCCAGGCCTCTATCACAGCCTGCTCACGGCCATGAAGCCGCTAATGGCTCGCGACCGAGTGGGCCTGGAGTCCAGCAAGATGAAAGAAGGAAACTATGAAGAGTTCCTTTGA

Transcript

OS493_025931-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B6ELU0	tRNA-cytidine(32) 2-sulfurtransferase OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=ttcA PE=3 SV=1
Q5E590	tRNA-cytidine(32) 2-sulfurtransferase OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=ttcA PE=3 SV=1
B5FE41	tRNA-cytidine(32) 2-sulfurtransferase OS=Aliivibrio fischeri (strain MJ11) OX=388396 GN=ttcA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01171 all species →	ATP_bind_3	PP-loop family	Family	Interproscan
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR011063 all species →	Domain	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43686 all species →	SULFURTRANSFERASE-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_025931-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025931-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_025931-T1 global co-expression network