Gene detail

Detailed information of OS493_025949-T1 in Lophelia pertusa

Genomic Location: scaffold_131:213172...213542
NR annotation: KAJ7356198.1, hypothetical protein OS493_025949 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P5L5	Formylglycine-generating enzyme OS=Bos taurus OX=9913 GN=SUMF1 PE=2 SV=1
Q8NBK3	Formylglycine-generating enzyme OS=Homo sapiens OX=9606 GN=SUMF1 PE=1 SV=3
Q8NBJ7	Inactive C-alpha-formylglycine-generating enzyme 2 OS=Homo sapiens OX=9606 GN=SUMF2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0088467 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03781 all species →	FGE-sulfatase	Sulfatase-modifying factor enzyme 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005532 all species →	Domain	Sulfatase-modifying factor enzyme	Interproscan
IPR042095 all species →	Homologous_superfamily	Sulfatase-modifying factor enzyme superfamily	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_025949-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_025949-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025949-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025949-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

63TPM > 0

7Conditions

26.6Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	1	0.45	8.04
polyp at pH7 6	18	1	0.48	8.67
coral polyp · control treatment	16	16	11.43	16.38
coral polyp · oil and dispersant treatment	16	15	10.50	17.85
coral polyp · oil treatment	16	15	13.57	26.62
coral polyp · dispersant treatment	16	11	4.57	13.43
Polyp	10	4	3.88	13.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.41
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.88
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.51
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.32
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.71
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.