Gene detail

Detailed information of OS493_025990-T1 in Lophelia pertusa

Genomic Location: scaffold_131:609707...620314
NR annotation: KAJ7356236.1, hypothetical protein OS493_025990 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TMR0	Lysosomal Pro-X carboxypeptidase OS=Mus musculus OX=10090 GN=Prcp PE=1 SV=2
P42785	Lysosomal Pro-X carboxypeptidase OS=Homo sapiens OX=9606 GN=PRCP PE=1 SV=1
Q5RBU7	Lysosomal Pro-X carboxypeptidase OS=Pongo abelii OX=9601 GN=PRCP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05577 all species →	Peptidase_S28	Serine carboxypeptidase S28	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR008758 all species →	Family	Peptidase S28	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11010 all species →	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070008 all species →	Molecular Function	serine-type exopeptidase activity	Interproscan
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01285	PRCP; lysosomal Pro-X carboxypeptidase	EC:3.4.16.2	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025990-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

155.7Max TPM

31.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.37	28.44
polyp at pH7 6	18	18	15.18	28.67
coral polyp · control treatment	16	16	49.35	155.73
coral polyp · oil and dispersant treatment	16	16	44.03	92.04
coral polyp · oil treatment	16	16	39.52	130.17
coral polyp · dispersant treatment	16	16	45.40	94.97
Polyp	10	9	6.06	13.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.72
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.09
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.29
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	155.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.06
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.37
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	130.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.67
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.30
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.02
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.83
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.