Gene detail

Detailed information of OS493_025991-T1 in Lophelia pertusa

Genomic Location: scaffold_131:620572...621852
NR annotation: KAJ7356237.1, hypothetical protein OS493_025991 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TA14	Lysosomal Pro-X carboxypeptidase OS=Bos taurus OX=9913 GN=PRCP PE=2 SV=1
Q5RBU7	Lysosomal Pro-X carboxypeptidase OS=Pongo abelii OX=9601 GN=PRCP PE=2 SV=1
P42785	Lysosomal Pro-X carboxypeptidase OS=Homo sapiens OX=9606 GN=PRCP PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05577 all species →	Peptidase_S28	Serine carboxypeptidase S28	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR008758 all species →	Family	Peptidase S28	Interproscan
IPR042269 all species →	Homologous_superfamily	Serine carboxypeptidase S28, SKS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11010 all species →	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070008 all species →	Molecular Function	serine-type exopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_025991-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_025991-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

215.5Max TPM

51.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	28.07	51.53
polyp at pH7 6	18	18	26.55	52.27
coral polyp · control treatment	16	16	82.99	215.50
coral polyp · oil and dispersant treatment	16	16	70.61	135.46
coral polyp · oil treatment	16	16	70.47	204.16
coral polyp · dispersant treatment	16	16	57.70	100.04
Polyp	10	10	16.39	43.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.68
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.61
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.94
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.28
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	215.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.21
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.16
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	204.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.50
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	100.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.33
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.59
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	43.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.18
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.51
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.88

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.