Gene detail

Detailed information of OS493_026002-T1 in Lophelia pertusa

Genomic Location: scaffold_131:702959...706198
NR annotation: KAJ7356247.1, hypothetical protein OS493_026002 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7EYQ9	Transmembrane protein 216 OS=Danio rerio OX=7955 GN=tmem216 PE=3 SV=1
B6ID01	Transmembrane protein 216 OS=Rattus norvegicus OX=10116 GN=Tmem216 PE=2 SV=2
Q9CQC4	Transmembrane protein 216 OS=Mus musculus OX=10090 GN=Tmem216 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008345 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09799 all species →	Transmemb_17	Predicted membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019184 all species →	Family	Uncharacterised protein family, transmembrane-17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13531 all species →	GEO07735P1-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19385	TMEM216; transmembrane protein 216	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026002-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

93TPM > 0

7Conditions

22.5Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	2.41	5.63
polyp at pH7 6	18	14	3.50	9.88
coral polyp · control treatment	16	15	5.72	22.48
coral polyp · oil and dispersant treatment	16	16	5.06	14.90
coral polyp · oil treatment	16	16	5.81	8.01
coral polyp · dispersant treatment	16	12	2.23	5.53
Polyp	10	8	4.44	10.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.