Gene detail

Detailed information of OS493_026009-T1 in Lophelia pertusa

Genomic Location: scaffold_131:760254...773715
NR annotation: KAJ7356254.1, hypothetical protein OS493_026009 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_026009-T1

ATGGTCATGGGAACGACCATTCTAGATGATGCTGCTACTCTGGCGGAGTTGGCTCATCGCGAGTATCAGGCAGGGAGCTATGATCGTGCCGAACAGATCTGTATGCAGTTATGGAGACAACAGCCAGAAAATACAGGAGTTTTACTTCTTTTATCATCAATACATTTTCAATGTCGTCGACTAGATCGGTCGGCGCATTTCAGTACGTTAGCCGTAAAGCAAAACCCAGTTCTCGCCGAAGCATACTCTAACTTAGGCAATGTCTTCAAAGAGAGAGGTCAGCTGAAAGATGCCTTGGATAATTATCGCCATGCCGTCAAGTTAAAACCGGATTTCATCGATGGCTACATCAACTTGGCTGCAGCATTAGTAGCTGCTGGTGATTTAGAGGGAGCTGTAAATGCATACGCGACAGCACTGCAGTACAACCCGGATCTATACTGTGTAAGGAGTGATCTCGGCAACTTATTGAAAGCTCTTGGTAGACTAGAAGAGGCTAAGTTTCTTGTGGAGAATGCACATCTTGTCTTGTCTCCTCACGGTAATGAAGCGTTGAGCTTTGTTAAAATGGATCCTGGCATTTCCCAGTATTTGAACAACAAATGTCACTGCTTTTATTTGAAACAAATGGCGTGCTACTTGAAAGCAATAGAAACGCAGCCCAGTTTTGCAGTGGCATGGAGTAACCTTGGCTGTGTCTTCAATGCTCAAGGAGAGATCTGGTTGGCCATTCATCACTTTGAGAAGGCTGTTCAGTTGGATCAGAACTTTCTTGATGCCTACATTAACCTTGGAAATGTATTAAAAGAGGCCAGGATTTTTGACAGAGCTGTTGCTGCATACCTACGTGCGTTAAACTTGAGTCCCAACCATGCAGTTGTCCATGGCAACTTGGCTTGTGTTTATTACGAACAAGGGCTTATTGACCTGGCAGTGGACACGTATAGAAGGGCAATTGAACTTCAACCAAACTTCCCGGATGCATATTGCAACCTGGCAAATGCTTTAAAGGAACAAGCAAAGGTATGTGAAGCAGAAGAATGCTACAACACTGCATTGAGATTATGTCCAACCCATGCAGATTCCCTCAACAACCTAGCGAACATCAAGAGAGAGCAAGGGAAGATAGAGGAGTCTGTCAGGCTCTACTGCAAAGCTTTAGAGATATTTCCTGAATTTGCTGCTGCGCACTCAAACCTCGCAAGTGTTCTACAACAGCAGGGGAAACTACCCGATGCTCTCCTGCATTACAAAGAAGCTATCAGGATTCACCCTACATTCGCTGATGCATATTCAAACATGGGAAACACACTCAAAGAAATGCAAGACATTCAAGCAGCCATTCAATGTTACACAAGAGCTATACAGATCAACCCAGCATTTGCCGATGCTCACAGTAACCTAGCGTCAGTTCACAAGGCAAGTGAAACCTTCTTGGCAAAGCTACCTGATTTGATAGCTTTCTTTTCATTGTACAAAAAAATATGTTTGAATGTGTGGCTTCTTATGGATGACTCTGGAAACATTCCTGAAGCAATACAGTCTTACAGGACAGCACTGAAATTGAAACCTAGCTTTCCTGATGCATACTGCAACCTTGCACATTGTTTACAGATTATCTGTGACTGGACAGATTATGACACACGCATGAAGAAACTTGTTGCTATTGTTGCTGACCAGTTGGAAAACAATCGACTTCCATCTGTGCATCCTCATCACAGTATGTTGTACCCACTTACACACCAAATGAGAAAAGATATTGCCAACAGGCATGGAAATCTTTGTGTCGAAAAGGTTGCTCTTTTACACAAACCACCATACTCTTATCCCAAGTCTTTGAAGGAAAGTGGTGGAAGGCTCAGAATAGGCTACGTGTCGAGTGATTTTGGTAATCACCCCACTTCCCACTTAATGCAGAGCATTCCAGGATTTCATGACAGTAGTAGAGTTGAGATATTCTGCTATGCTCTGACGGCTGACGACAGCACCAGTTTCAGAAGGAAGATTGAGGGAGATTCAGAGCATTTTGTTGATCTGTCTTCCATCCCTTGCCATGGAGAAGTTGCTGATCGTATTAACGCTGATGGCATTCATGTGCTTGTTAACATGAATGGCTACACAAAAGGAGCAAGAAATGAAATATTTGCTCTTCGCCCTGCTCCAGTCCAGGTAATGTGGCTGGGCTACCCTGGCACAAGTGGTGCCCCATACATGGACTACATCATTACCGATGAAATCACCTCACCCCTCGAACTCGCTGATCAGTACTCGGAGAAGCTCGCATTCATGCCACACACATTCTTTGTTGGTGATCACAAGCAGATGTTCCCACACCTTATACAATACCTGAGAGCACCCAGCAACCAAGTCATTGCAGAGGTGACGCAAAATGGACTGGTACCAGCTCACGCCGCTGCTGTTCTGCTTGATGAAGAGAAAAACGATCCTAACCTGGTACCTAAAGTTGGTGCGTTGATTGAGGAGAAGAAGAGAGAGTACTCCGGATGCAAGGACAGTGGTGAGAGGATCCCGTCAACTGTTCCTATAATAACTCGCTCTCATTACAGCCTGCCAGAGGACGCTACAGTGTACTGTAATTTCAACCAGTTATACAAGATCGATCCGCCAACACTGCGCAGCTGGGTGAATATCCTCAAACACGTGCCCAACTCTGTCCTGTGGCTACTCCGATTTCCAGCTGTAGGTGAACCCAACCTCAAGGCACAGGCCATGGCAATGGGTCTGTCCCAAGAGCGTATTGTCTTCTCTCCAGTCGCACCTAAAGAGGAGCATGTCCGCCGTGGCCAACTGGCTGATGTATGCCTGGACACACCACTGTGCAATGGTCACACAACAGGCATGGATGTCCTGTGGGCCGGCTGCCCTATGGTAACGCTTCCACTTGAAACGTTAGCATCGCGAGTAGCTTCTTCACAGCTCACAGCTCTTGGCTGCCCAGAACTTGTGGCAAGAAATCGAGAAGATTATGAAAACATCTCCATCAGGCTCGGAAATGATGCAAGCTAG

Transcript

OS493_026009-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15294	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens OX=9606 GN=OGT PE=1 SV=3
P81436	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus OX=9986 GN=OGT PE=1 SV=2
Q27HV0	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa OX=9823 GN=OGT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002429 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13844 all species →	Glyco_transf_41	Glycosyl transferase family 41	Family	Interproscan
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR029489 all species →	Domain	O-GlcNAc transferase, C-terminal	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44366 all species →	UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006493 all species →	Biological Process	protein O-linked glycosylation	Interproscan
GO:0097363 all species →	Molecular Function	protein O-acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026009-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_026009-T1 global co-expression network