Gene detail

Detailed information of OS493_026011-T1 in Lophelia pertusa

Genomic Location: scaffold_131:787931...789367
NR annotation: KAJ7356256.1, anchor protein 17A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q02040	A-kinase anchor protein 17A OS=Homo sapiens OX=9606 GN=AKAP17A PE=1 SV=2
A2A3V1	A-kinase anchor protein 17B OS=Mus musculus OX=10090 GN=Akap17b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008204 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_026011-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12484 all species →	B-LYMPHOCYTE ANTIGEN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_026011-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13169	AKAP17, SFRS17; A-kinase anchor protein 17	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026011-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

38.1Max TPM

7.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.11	12.07
polyp at pH7 6	18	18	9.39	28.35
coral polyp · control treatment	16	16	9.47	32.68
coral polyp · oil and dispersant treatment	16	16	7.77	38.07
coral polyp · oil treatment	16	16	8.03	11.62
coral polyp · dispersant treatment	16	16	3.57	8.30
Polyp	10	10	10.11	20.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.81
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.35
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.47
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.33
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.79

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.