Gene detail

Detailed information of OS493_026118-T1 in Lophelia pertusa

Genomic Location: scaffold_133:83643...86903
NR annotation: KAJ7390250.1, Sarcoma antigen 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TAF4	Integrator complex subunit 6-A OS=Xenopus laevis OX=8355 GN=ints6-a PE=2 SV=1
Q6PCM2	Integrator complex subunit 6 OS=Mus musculus OX=10090 GN=Ints6 PE=1 SV=1
Q9UL03	Integrator complex subunit 6 OS=Homo sapiens OX=9606 GN=INTS6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005536 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13519 all species →	VWA_2	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR051113 all species →	Family	Integrator complex subunit 6	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12957 all species →	DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026118-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026118-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

20.2Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.27	9.48
polyp at pH7 6	18	15	5.05	9.37
coral polyp · control treatment	16	16	7.63	15.34
coral polyp · oil and dispersant treatment	16	16	6.99	13.41
coral polyp · oil treatment	16	16	6.75	10.93
coral polyp · dispersant treatment	16	16	8.99	20.23
Polyp	10	8	1.79	4.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.34
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.73
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.87
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.