Gene detail

Detailed information of OS493_026123-T1 in Lophelia pertusa

Genomic Location: scaffold_133:160649...162664
NR annotation: KAJ7390255.1, hypothetical protein OS493_026123 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009530 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15503 all species →	PPP1R35_C	Protein phosphatase 1 regulatory subunit 35 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033590 all species →	Family	Protein phosphatase 1 regulatory subunit 35	Interproscan
IPR029135 all species →	Domain	Protein phosphatase 1 regulatory subunit 35, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28625 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 35	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0010923 all species →	Biological Process	negative regulation of phosphatase activity	Interproscan
GO:0019902 all species →	Molecular Function	phosphatase binding	Interproscan
GO:0045724 all species →	Biological Process	positive regulation of cilium assembly	Interproscan
GO:1903724 all species →	Biological Process	positive regulation of centriole elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17574	PPP1R35; protein phosphatase 1 regulatory subunit 35	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026123-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

19.6Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.68	8.60
polyp at pH7 6	18	18	4.55	9.56
coral polyp · control treatment	16	16	4.48	12.90
coral polyp · oil and dispersant treatment	16	15	3.44	19.58
coral polyp · oil treatment	16	16	3.59	8.27
coral polyp · dispersant treatment	16	15	1.69	4.44
Polyp	10	10	3.95	6.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.56
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.70
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.63
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.82
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.39

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.