Gene detail

Detailed information of OS493_026147-T1 in Lophelia pertusa

Genomic Location: scaffold_133:372674...381683
NR annotation: KAJ7390272.1, hypothetical protein OS493_026147 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29241	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Aplysia californica OX=6500 PE=1 SV=1
Q27312	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Aplysia kurodai OX=6501 PE=1 SV=1
Q10588	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 OS=Homo sapiens OX=9606 GN=BST1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001254 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02267 all species →	Rib_hydrolayse	ADP-ribosyl cyclase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003193 all species →	Family	ADP-ribosyl cyclase (CD38/157)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10912 all species →	ADP-RIBOSYL CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0061809 all species →	Molecular Function	NAD+ nucleotidase, cyclic ADP-ribose generating	Interproscan
GO:0003953 all species →	Molecular Function	NAD+ nucleosidase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016849 all species →	Molecular Function	phosphorus-oxygen lyase activity	Interproscan
GO:0030890 all species →	Biological Process	positive regulation of B cell proliferation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026147-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026147-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

26.2Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.70	13.47
polyp at pH7 6	18	17	7.91	13.81
coral polyp · control treatment	16	16	7.77	26.19
coral polyp · oil and dispersant treatment	16	15	6.54	16.21
coral polyp · oil treatment	16	16	6.80	17.61
coral polyp · dispersant treatment	16	15	4.77	10.14
Polyp	10	9	1.98	4.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.43
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.46
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.