Gene detail

Detailed information of OS493_026188-T1 in Lophelia pertusa

Genomic Location: scaffold_133:855878...858479
NR annotation: KAJ7390313.1, Telomerase Cajal body protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VC51	Telomerase Cajal body protein 1 OS=Mus musculus OX=10090 GN=Wrap53 PE=1 SV=1
Q5XII5	Telomerase Cajal body protein 1 OS=Rattus norvegicus OX=10116 GN=Wrap53 PE=1 SV=1
Q60525	Telomerase Cajal body protein 1 OS=Mesocricetus auratus OX=10036 GN=Wrap53 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004336 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR051150 all species →	Family	SWT21/TCAB1 mRNA Splicing and Telomere Maintenance	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13211 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0030576 all species →	Biological Process	Cajal body organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026188-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026188-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

19.8Max TPM

5.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	5.08	9.31
polyp at pH7 6	18	15	6.70	11.58
coral polyp · control treatment	16	16	7.16	13.92
coral polyp · oil and dispersant treatment	16	16	4.47	7.56
coral polyp · oil treatment	16	16	7.03	9.86
coral polyp · dispersant treatment	16	15	2.97	7.75
Polyp	10	9	7.62	19.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.96
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.58
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.18
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.22
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.