Gene detail

Detailed information of OS493_026199-T1 in Lophelia pertusa

Genomic Location: scaffold_133:970384...975314
NR annotation: KAJ7390323.1, hypothetical protein OS493_026199 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_026199-T1

ATGCCAAAATCCTTTCTTGTGAAAAAGGCCAAGCGCCGAACCGATCTTGGCGAAGAAGGAAGCAGCGCTGGTCCTTTCGATAGCGGAGACTTCTCTCTTCATAGCGACGCCACGTCGAACGAGAAACACCAGGACACATCGAGACGTTTATACTGCCATACTGGTGAAGACACGCGGAGCGCACATGGAAAGGACATACCAAATGCTACAAGTAATCAAATCTTCGACGCACTCCCAAGTAAAATTGCTGCAGCAGAAAGATTTACGGACAATTGGCAACTTATGCCTCGTCGCATGTTATTCCTTCCACCGTTACTAACACAACGTAATTCTTTCACGGAATTTCGTGTGTCCACTTCAAAGATGCAACCCGTCCAGACCTCGGAAGATGGCGTTTCGCTGCCAGTTTTAAGAAATGAGCAAAGAAGAGGCAGTGTGTTAAAGTTAAACCCTGACAGGAAGATGCCAGAAGATGAAGAAACACGAGGAGCAGTCAAAAACAATAAAAGTGTACTGCCACAGCCTCTAGATGCAATTTCGCCAATCTGGGAACCAACATCAAATGGGCCCAAATTAACATTTCCTGATGGAAAGATAAACAGAGAGCGCTGTGGGATCGATCCGTTTGATCTTCGTCCTTTTGAGGACGTTTTTGAATCTATGAAGAGGAAACGTATAGAAAAAGAAAGGGAATTGTTGTCTGCTAATGGTGTTCGGCTTCTCGGAAACTTGGATGATCTACCAGAGGCCAAGCGGAAGAAACACGAAAGAGGCGGTGTGAGTCCAGAGAGTGTCGGCAATTCGATGGAACATTGGGAAAACGAAGAACGGTGTTTCGGTCACCTAGAAGCCAATCTTCAAATATCAAAGGAAGACAATGCGAGTCCAGAAAAACACTTGAACAGAGTGGTCAAGAATGGTTTGAAACAACGCGAATCGAGTGCAGTGCAACACAGCCGGATTACAAATCGAATGGAATCGGAATTTTATTACCAAAACTATCATCGTGATTGGCGCGTTTCCGTGCCGTATTTGAACCCAACAAGATTAGCAGATAGGATATTTAATGATCGACATTCAGTGAGAGAGAAAAGGAGTAGTGTATCGAGCTCTGTGTGGATGCCTAATCATTTCAAGACAACGACAAAGGAAGAGGTGAACAGAGTTGTGAATGGTTCCAAACGCGGAAAAGACCCCTGGAAGTCCGAGATGAACATGGAAAGTCGCCTCGTGTGTGAGACCAGGGAAAAAACACCTGTGATCTTCAGTCCGAAGGAAATGAACACGAAAACTACAGAACCTGAAAAGCACAAGATTTGGTTACGAGATGACCCGCTCAGCCCAAAACCCGTAGACATGAAAACGATAGAATCAAAGTTGTCTTCTGAAAAGCACAAGATTTGGTTACGAGATGGTCCGCTTAGGCCAAAACCCGTGCAAGGGGACTACAGTGACACAAGAGCTGTGGATGCTGATGGCAAAGACCGTATTCGAGGCTTTCAAAGGAAATCAAGAAAACGACCAAGAGAACAGGAACTGAACAGTGAAGATGAAGCAAGAAAGAGTCAGTGTTCACCAGATCACAGTATTATCAAGACTATTCGTGGCATCTCGAGTAACATGAAAGAACAGTTAGTGAAGACATTCGGTTTTAAGAATGATCGAGTTGCTGAAACTTTCAGCCCGGTGAAGAGCAGAGACTGGGAGAAATCTACTGCTGTATTCGGATCTCCAGAGCGTATCAGTACAGACTTGATAATGATTGATGCAAAGGAACGTGAAGACCTCAAAATGTTGCGACAACTCCAAGCTGCGAAGGCTCATGCTGTTCAAAAACCAAACGGTAAAGTGTTTTCAGATCATTCAACTCTTTGGCTGCTTAACAAGGAGATAAAACCACCACAAGTTAGCGTTCACCCTAAAAGGCCTGTTGCAACCTCGAGCCCGCCATTTTGGGTGGCGGCAAATGGGGGATTTGGTGTTCGGACTCAACTTGGCATGCTCCCGAACAAAACTCACGAAGCATCGAGCAAAGAATCCTCCAACCACAGATGTGAAATCTGCAACAGCACCTTCCCGCTTCGACGCCTCCTCAACCGACATCTTAAAACGCATTCGTTCTACAAGCGTTACGCGTGCTCGTTCTGTGACAAGGGCTTCAACGATACATTTGACTTGAAGCGTCATGTAAGGACACACACGGGAATCAAGCCATTTAAGTGCGAACAATGCGACAAGTCGTTCACGCAGCGCTGCTCCTTGGAGGCACACCAGTCACGTGTTCACGGCTTGGTGCATAAGTTTGGCTTCCGTGAGAGACGCTCCAAGATGTTCGTGTGCGAAGATTGTGGCGCCACCTTCAGAGACAACCAATCAGAATTCATGAATCACATGACCAGCACGCACCCGGATAAAGACAAATCTACTTGGAACAAGAACAGCAATGGACTTTGTTCACGAATAATTCCGTTTTAA

Transcript

OS493_026199-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5EDU6	Transcription factor ovo-like homolog lin-48 OS=Caenorhabditis elegans OX=6239 GN=lin-48 PE=1 SV=1
P51521	Transcriptional regulator ovo OS=Drosophila melanogaster OX=7227 GN=ovo PE=1 SV=2
Q8CIV7	Transcription factor Ovo-like 2 OS=Mus musculus OX=10090 GN=Ovol2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003205 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR027756 all species →	Family	Ovo-like	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10032 all species →	ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026199-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_026199-T1 global co-expression network