Gene detail

Detailed information of OS493_026270-T1 in Lophelia pertusa

Genomic Location: scaffold_134:536887...540474
NR annotation: KAJ7383739.1, serine/threonine protein kinase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O74304	MAP kinase kinase kinase win1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=win1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000248 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44167 all species →	OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0044773 all species →	Biological Process	mitotic DNA damage checkpoint signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026270-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026270-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

82TPM > 0

7Conditions

4.1Max TPM

0.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	1.57	4.12
polyp at pH7 6	18	12	0.82	2.53
coral polyp · control treatment	16	14	0.75	2.39
coral polyp · oil and dispersant treatment	16	11	0.93	2.92
coral polyp · oil treatment	16	12	0.59	2.75
coral polyp · dispersant treatment	16	13	0.48	2.22
Polyp	10	5	0.09	0.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.75
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.02
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.