Gene detail

Detailed information of OS493_026314-T1 in Lophelia pertusa

Genomic Location: scaffold_134:849188...851098
NR annotation: KAJ7383780.1, hypothetical protein OS493_026314 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VQ37	Mitochondrial carrier protein Rim2 OS=Drosophila melanogaster OX=7227 GN=Rim2 PE=2 SV=2
Q1LZB3	Solute carrier family 25 member 33 OS=Bos taurus OX=9913 GN=SLC25A33 PE=2 SV=1
Q3TZX3	Solute carrier family 25 member 33 OS=Mus musculus OX=10090 GN=Slc25a33 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001771 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049562 all species →	Family	Solute carrier family 25 member 33/36-like	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45829 all species →	MITOCHONDRIAL CARRIER PROTEIN RIM2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000002 all species →	Biological Process	mitochondrial genome maintenance	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0015218 all species →	Molecular Function	pyrimidine nucleotide transmembrane transporter activity	Interproscan
GO:1990519 all species →	Biological Process	pyrimidine nucleotide import into mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026314-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026314-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

196.6Max TPM

39.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.29	32.96
polyp at pH7 6	18	18	17.25	29.66
coral polyp · control treatment	16	16	33.08	127.50
coral polyp · oil and dispersant treatment	16	16	41.06	110.57
coral polyp · oil treatment	16	16	22.42	34.85
coral polyp · dispersant treatment	16	16	124.23	196.58
Polyp	10	10	16.88	40.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.96
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.91
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.33
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.09
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.09
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.53
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.53
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.93
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.15
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	186.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	178.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	173.92
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	171.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	156.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	152.98
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	129.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	40.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.60

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.