Gene detail

Detailed information of OS493_026315-T1 in Lophelia pertusa

Genomic Location: scaffold_134:863979...864983
NR annotation: KAJ7383781.1, hypothetical protein OS493_026315 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKP7	Solute carrier family 25 member 36 OS=Gallus gallus OX=9031 GN=SLC25A36 PE=2 SV=1
Q6DG32	Solute carrier family 25 member 36-A OS=Danio rerio OX=7955 GN=slc25a36a PE=2 SV=1
Q96CQ1	Solute carrier family 25 member 36 OS=Homo sapiens OX=9606 GN=SLC25A36 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001775 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan
IPR049562 all species →	Family	Solute carrier family 25 member 33/36-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45829 all species →	MITOCHONDRIAL CARRIER PROTEIN RIM2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0000002 all species →	Biological Process	mitochondrial genome maintenance	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0015218 all species →	Molecular Function	pyrimidine nucleotide transmembrane transporter activity	Interproscan
GO:1990519 all species →	Biological Process	pyrimidine nucleotide import into mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15116	SLC25A33_36, RIM2; solute carrier family 25, member 33/36	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026315-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

315.3Max TPM

63.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.83	25.14
polyp at pH7 6	18	18	14.74	35.79
coral polyp · control treatment	16	16	56.68	130.36
coral polyp · oil and dispersant treatment	16	16	82.84	235.36
coral polyp · oil treatment	16	16	39.29	92.94
coral polyp · dispersant treatment	16	16	210.87	315.33
Polyp	10	10	24.09	88.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.06
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.80
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.51
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.13
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	235.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.96
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.04
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.23
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	315.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	303.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	296.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	274.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	269.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	264.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	246.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	242.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	235.01
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	204.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	190.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	141.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	88.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	46.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	24.49
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.51
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.19

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.