Gene detail

Detailed information of OS493_026325-T1 in Lophelia pertusa

Genomic Location: scaffold_134:916020...936111
NR annotation: KAJ7383791.1, N-acylsphingosine amidohydrolase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13510	Acid ceramidase OS=Homo sapiens OX=9606 GN=ASAH1 PE=1 SV=5
Q6P7S1	Acid ceramidase OS=Rattus norvegicus OX=10116 GN=Asah1 PE=1 SV=1
A5A6P2	Acid ceramidase OS=Pan troglodytes OX=9598 GN=ASAH1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001747 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15508 all species →	NAAA-beta	beta subunit of N-acylethanolamine-hydrolyzing acid amidase	Family	Interproscan
PF02275 all species →	CBAH	Linear amide C-N hydrolases, choloylglycine hydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029130 all species →	Domain	Acid ceramidase, N-terminal	Interproscan
IPR029132 all species →	Domain	Choloylglycine hydrolase/NAAA C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28583 all species →	ACID AMIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0017040 all species →	Molecular Function	N-acylsphingosine amidohydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026325-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026325-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

140.7Max TPM

51.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	33.90	51.39
polyp at pH7 6	18	18	36.71	54.89
coral polyp · control treatment	16	16	55.98	76.05
coral polyp · oil and dispersant treatment	16	16	87.49	140.71
coral polyp · oil treatment	16	16	50.26	79.69
coral polyp · dispersant treatment	16	16	53.90	83.51
Polyp	10	10	40.58	77.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.10
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.39
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.21
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.33
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.59
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.49
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.58
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.76
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.54
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.15
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	77.84
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	52.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	52.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	51.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	36.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	31.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	26.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.89

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.