Gene detail

Detailed information of OS493_026330-T1 in Lophelia pertusa

Genomic Location: scaffold_134:970097...972586
NR annotation: KAJ7383796.1, 60S ribosomal protein L31 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GP16	Large ribosomal subunit protein eL31 OS=Heliothis virescens OX=7102 GN=RpL31 PE=2 SV=1
Q7KF90	Large ribosomal subunit protein eL31 OS=Spodoptera frugiperda OX=7108 GN=RpL31 PE=2 SV=1
Q9IA76	Large ribosomal subunit protein eL31 OS=Paralichthys olivaceus OX=8255 GN=rpl31 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007765 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01198 all species →	Ribosomal_L31e	Ribosomal protein L31e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023621 all species →	Homologous_superfamily	Large ribosomal subunit protein eL31 domain superfamily	Interproscan
IPR000054 all species →	Family	Large ribosomal subunit protein eL31	Interproscan
IPR020052 all species →	Conserved_site	Large ribosomal subunit protein eL31, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10956 all species →	60S RIBOSOMAL PROTEIN L31	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02910	RP-L31e, RPL31; large subunit ribosomal protein L31e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026330-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

7,768.1Max TPM

3,850.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4,752.94	6,489.28
polyp at pH7 6	18	18	4,851.92	6,641.07
coral polyp · control treatment	16	16	3,190.12	6,085.56
coral polyp · oil and dispersant treatment	16	16	2,780.92	4,248.63
coral polyp · oil treatment	16	16	3,753.25	6,759.15
coral polyp · dispersant treatment	16	16	2,578.61	7,768.10
Polyp	10	10	5,385.19	6,750.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,489.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,488.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,450.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,437.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,158.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,081.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,070.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,016.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,403.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,392.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,385.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,374.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,374.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,373.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,817.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,789.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,727.73
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,721.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,641.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,637.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,315.67
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,257.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,024.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,919.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,669.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,666.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,595.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,561.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,326.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,307.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,033.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,989.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,944.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,885.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,296.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,264.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6,085.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,144.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,070.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,885.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,583.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,408.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,191.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,005.67
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,708.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,661.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,653.79
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,585.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,505.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,387.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,270.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,893.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,248.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,326.59
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,228.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,147.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,043.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,889.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,772.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,738.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,667.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,616.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,506.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,434.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,311.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,274.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,201.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,088.50
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,759.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,920.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,284.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,198.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,158.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,661.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,454.21
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,352.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,329.95
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,240.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,204.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,106.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,990.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,923.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,763.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,704.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7,768.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,889.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,751.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,520.94
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,487.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,368.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,277.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,220.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,105.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,976.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,854.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,798.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,722.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,708.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,427.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,380.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6,750.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6,318.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6,034.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5,627.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5,615.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5,611.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5,011.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4,762.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4,239.30
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3,880.22

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.