Gene detail

Detailed information of OS493_026332-T1 in Lophelia pertusa

Genomic Location: scaffold_134:984691...998913
NR annotation: KAJ7383798.1, nuclear factor of activated T-cells 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_026332-T1

ATGATAAGCGACACAATCTGGCCGCAGATGAAACAGACAACGGCGATCGGTGAATCGATGGCTCCACTCGACAATGTCGTCGACTTCATTGATATAGATCATTTTTCGCCTGAATCTCAAGATAAAGAAATAGGACTGTTCAATCCTACCCAACCAAGTGATTTTGTTGTGGCCATGGAGGAAGTGCCAGGTTTTCAAATGGACATGACCTTCCTTGAGCCGCCAGTGATTGCAGATTGTCCTCCACTTGGATTCCCCAGTCTGGAGGAGGAACCGTACAATTCACCGTTCGATTCTGATATCTCGGACAGTTGTCCGCCATCACCTTCCCCGGTTTCTTCGCCTTCACCACACTCATCGTCATCCTCAGAGTCAGGTATAGAGGATGTGAGCGACATGGAAGAAGCGACTTGTGCTTTCCACCAAACTGAAAATGGAAGTTTGATTGTGAAAGCGGAGAATCCATTATCACCACTGAATGCTATGAACCAACCTCCAGTTAACAGTGTGGATAAAAAGAGACGCAAGAGTTCCAGGAGATCTCAAAATGACAGCAGTGTCTTGGAGGAACTCAACAAGCTTCTTGTGGAAACCAGTGTGTCTAGTTTGGCATCTGCGTCGATGAATAATTCAGGATCTCCACCTTACCAAACCCAAACCAAAATTACTGGCCTTGATGACATGATGGTTGGTGTTCAAACGACAGCGTCGCCGACATCTGGATCCCTCAGCTGTCCGCTGTCTGGTCAAGCTAGCCAAGCGACTACGTTGGCATCTGGGTCTTGTCCTGTCTCCGTGTCAACAACAACAGCTACTGTTACTAAGATAAGCACTCTGCCTCCAGTTTCCTCTCCGTCCAGAATAAGGAGCAAACCCACAAGGAATCCTAAAAAGCCTGATGAACCAAAGATTGTGATTATTGAGGAGCCTGAAGAGAATTATAGAGCAAGATATGAAAGTGAAGGGTGCAGAGGTCCTATCCATGGCTCTCAAGACAACACTTTCCCAGCTGTGAAGGTTACAGGATATGATGAAGCTGTTTGGATTACAGTCCATCTGACCACCAGTGGCGGTGTACCACATTACCATTCTATTCACGGACCTGGCTCTACTAAGGTGCCTTGCAAGGAGGCCACATTACCAGGGGGTGTGCCAGCTGTCCAAGTTATGGTTGCACCGGATACCAACATGACTGCTGTGCTCGACTCGCTGAGCATTCGCAGACTGAGGAACTGGGAAGGTGACAGGGAGTTGAGAAAAAGGGGAATTGATCCGAGAACTTGGAAGAAGGAACGCAAAGAAGCACGACTATTGTTTCAGGCAGAAATTCCAGAAAAAAATGGTCGTCCAGCTCTGAAGCTCACTTGCAAATCTAAAGTGTTCCAGTGCAGTTCTTCTGGTCCTCCTGGTAATCCAGAAATATGGTGGGCCAGTATCAGCGAGGGTTCTGTTGAGGGTGGCGACGAACTGGGTCTGATTGGAAAAAAGTTTCAGTCAGGTTTCAAAGTACGATTTTTCTCGGTGAAGCCCTCAGAAACCTGGGAGAGTTTTGCAGAGGTCGACAAGAGTAAGTCACATCAGGGTGCTGCAGTGGTTCTCACTCCAGCATATTGTGACACTGAAATAACCTCTCCCGTCACTGTCAATGTGGTGGTAACGTTTGGAAATGGCCGAGATGCAAAATCTAGTGAACCTATTGAGTTCACCTACAAACCCAAACCTAACTTACAAGTTCAGGAAGTAGAAATGCATCCCAGCCTTCCCATCACTGCTGTTGCCACCGACAATTTTTTACCTGTGGAAATATTCAACTCAATTGGTGATATTGTGTTGAACAACTTGCCCGAGGAAATCATGGAACCAGCTGTACCAGTCATATTACCTGCCGTGACTGAAGAACAAGACTGGCAAGCCATGTGCGTCCAACTTGGGGATCTGCATCAAAAGGGAGACCTTTCTTCAGAACATGTCAAGGACTTGTGTGAATTCATCAAGAGGAGAGACACTCTGCTGCTTCAAGCTTTTCGTTCGTCGAGAACTGCTAGCACCAGTGAACAACTGCAAGCGAACTTCAAACAGTATCTGTCGGGAATGCTTTGTAATTTGTAG

Transcript

OS493_026332-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001943 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16179 all species →	RHD_dimer	Rel homology dimerisation domain	Domain	Interproscan
PF00554 all species →	RHD_DNA_bind	Rel homology DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037059 all species →	Homologous_superfamily	Rel homology domain (RHD), DNA-binding domain superfamily	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR032397 all species →	Domain	Rel homology dimerisation domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008366 all species →	Family	Nuclear factor of activated T cells (NFAT)	Interproscan
IPR011539 all species →	Domain	Rel homology domain, DNA-binding domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12533 all species →	NFAT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026332-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_026332-T1 global co-expression network