Gene detail

Detailed information of OS493_026358-T1 in Lophelia pertusa

Genomic Location: scaffold_135:372716...383201
NR annotation: KAJ7377791.1, hypothetical protein OS493_026358 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DX22	L-fucono-1,5-lactonase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=Patl_0798 PE=1 SV=1
Q0BGE1	L-fucono-1,5-lactonase OS=Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD) OX=339670 GN=Bamb_1224 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004378 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04909 all species →	Amidohydro_2	Amidohydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR052350 all species →	Family	Metallo-dependent Lactonases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43569 all species →	AMIDOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026358-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026358-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

69.5Max TPM

28.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.39	35.91
polyp at pH7 6	18	18	25.64	41.28
coral polyp · control treatment	16	16	31.31	51.66
coral polyp · oil and dispersant treatment	16	16	39.88	69.55
coral polyp · oil treatment	16	16	33.49	57.33
coral polyp · dispersant treatment	16	16	21.86	40.68
Polyp	10	10	24.12	52.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.83
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.67
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.09
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.61
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.09
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.23
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.12
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.69
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.90
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.22
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.91
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.36
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	52.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	42.90
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.72

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.