Gene detail

Detailed information of OS493_026435-T1 in Lophelia pertusa

Genomic Location: scaffold_136:366260...406800
NR annotation: KAJ7371337.1, Fmn2p [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NZ56	Formin-2 OS=Homo sapiens OX=9606 GN=FMN2 PE=1 SV=4
Q9JL04	Formin-2 OS=Mus musculus OX=10090 GN=Fmn2 PE=1 SV=2
Q68DA7	Formin-1 OS=Homo sapiens OX=9606 GN=FMN1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002395 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45920 all species →	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02184	FMN2; formin 2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026435-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

31.5Max TPM

17.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.33	24.77
polyp at pH7 6	18	18	17.81	28.73
coral polyp · control treatment	16	16	17.17	31.50
coral polyp · oil and dispersant treatment	16	16	14.37	26.08
coral polyp · oil treatment	16	16	18.75	22.86
coral polyp · dispersant treatment	16	16	15.72	27.18
Polyp	10	10	18.61	29.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.25
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.42
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.99
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.34
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.01
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.48
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.58
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.