Gene detail

Detailed information of OS493_026533-T1 in Lophelia pertusa

Genomic Location: scaffold_137:712705...717008
NR annotation: KAJ7356150.1, hypothetical protein OS493_026533 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001514 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37860 all species →	AGAP008810-PA	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_026533-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026533-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026533-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,901.3Max TPM

658.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	547.40	774.69
polyp at pH7 6	18	18	711.24	1,047.97
coral polyp · control treatment	16	16	654.14	898.31
coral polyp · oil and dispersant treatment	16	16	1,059.97	1,901.33
coral polyp · oil treatment	16	16	793.10	1,339.14
coral polyp · dispersant treatment	16	16	496.40	937.09
Polyp	10	10	171.91	277.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	774.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	763.64
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	736.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	736.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	599.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	597.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	590.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	583.53
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	487.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	478.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	474.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	474.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	448.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	439.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	432.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	429.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	404.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	401.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,047.97
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,018.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	966.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	955.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	802.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	797.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	747.01
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	743.45
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	681.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	672.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	618.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	618.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	563.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	550.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	537.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	530.82
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	476.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	474.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	898.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	786.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	764.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	761.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	714.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	698.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	694.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	679.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	671.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	645.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	645.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	613.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	589.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	558.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	416.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	327.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,901.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,372.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,350.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,213.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,147.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,082.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,061.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,061.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,020.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,013.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	922.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	909.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	879.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	776.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	634.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	612.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,339.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,145.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,033.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	953.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	936.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	890.83
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	865.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	837.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	791.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	761.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	756.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	632.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	632.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	511.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	303.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	299.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	937.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	921.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	885.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	676.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	638.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	540.97
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	491.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	478.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	438.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	431.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	424.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	369.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	274.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	245.99
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	158.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	277.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	215.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	211.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	187.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	173.10
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	164.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	152.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	132.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	127.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	76.62

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.