Gene detail

Detailed information of OS493_026534-T1 in Lophelia pertusa

Genomic Location: scaffold_137:720691...721956
NR annotation: KAJ7356151.1, CTD small phosphatase-like protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05D32	CTD small phosphatase-like protein 2 OS=Homo sapiens OX=9606 GN=CTDSPL2 PE=1 SV=2
Q66KM5	CTD small phosphatase-like protein 2 OS=Xenopus tropicalis OX=8364 GN=ctdspl2 PE=2 SV=1
Q8BG15	CTD small phosphatase-like protein 2 OS=Mus musculus OX=10090 GN=Ctdspl2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008685 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031 all species →	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050365 all species →	Family	Mitochondrial import inner membrane translocase subunit TIM50	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR004274 all species →	Domain	FCP1 homology domain	Interproscan
IPR011948 all species →	Domain	Dullard phosphatase domain, eukaryotic	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12210 all species →	DULLARD PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17616	CTDSPL2; CTD small phosphatase-like protein 2	EC:3.1.3.-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026534-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

41.7Max TPM

15.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.82	20.90
polyp at pH7 6	18	18	15.03	24.77
coral polyp · control treatment	16	16	20.52	35.42
coral polyp · oil and dispersant treatment	16	16	21.02	41.73
coral polyp · oil treatment	16	16	16.55	30.44
coral polyp · dispersant treatment	16	16	9.63	15.71
Polyp	10	10	10.07	15.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.01
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.63
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.98
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.33
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.72
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.57
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.54
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.10
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.96
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.60
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.89
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.40

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.