Detailed information of OS493_026557-T1 in Lophelia pertusa

Genomic Location: scaffold_137:1043274...1047543
NR annotation: KAJ7356173.1, Tetratricopeptide repeat protein 39B [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28DB0Tetratricopeptide repeat protein 39B OS=Xenopus tropicalis OX=8364 GN=ttc39b PE=2 SV=1
Q5XHH9Tetratricopeptide repeat protein 39B OS=Xenopus laevis OX=8355 GN=ttc39b PE=2 SV=1
Q5VTQ0Tetratricopeptide repeat protein 39B OS=Homo sapiens OX=9606 GN=TTC39B PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001963 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10300
all species →		Iml2-TPR_39Iml2/Tetratricopeptide repeat protein 39RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019412
all species →		FamilyInclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39Interproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31859
all species →		TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_026557-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_026557-T1 global co-expression network
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