Gene detail

Detailed information of OS493_026599-T1 in Lophelia pertusa

Genomic Location: scaffold_138:417696...424071
NR annotation: KAJ7327721.1, FAM47 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005949 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14642 all species →	FAM47	FAM47 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032743 all species →	Family	FAM47 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46449 all species →	ZGC:158260	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0045815 all species →	Biological Process	transcription initiation-coupled chromatin remodeling	Interproscan
GO:0071168 all species →	Biological Process	protein localization to chromatin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026599-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026599-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

37.1Max TPM

13.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.43	18.31
polyp at pH7 6	18	18	10.99	23.10
coral polyp · control treatment	16	16	16.43	37.07
coral polyp · oil and dispersant treatment	16	16	13.86	27.30
coral polyp · oil treatment	16	16	14.61	21.10
coral polyp · dispersant treatment	16	16	12.51	23.66
Polyp	10	10	14.38	19.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.73
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.17
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.97
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.01
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.62
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.44
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.