Gene detail

Detailed information of OS493_026632-T1 in Lophelia pertusa

Genomic Location: scaffold_138:802348...803031
NR annotation: KAJ7327753.1, hypothetical protein OS493_026632 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O02298	Soluble guanylate cyclase gcy-35 OS=Caenorhabditis elegans OX=6239 GN=gcy-35 PE=1 SV=3
P92006	Soluble guanylate cyclase gcy-34 OS=Caenorhabditis elegans OX=6239 GN=gcy-34 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001319 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07700 all species →	HNOB	Haem-NO-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038158 all species →	Homologous_superfamily	H-NOX domain superfamily	Interproscan
IPR011644 all species →	Domain	Heme NO-binding	Interproscan
IPR024096 all species →	Homologous_superfamily	NO signalling/Golgi transport ligand-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45655 all species →	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0004383 all species →	Molecular Function	guanylate cyclase activity	Interproscan
GO:0008074 all species →	Cellular Component	guanylate cyclase complex, soluble	Interproscan
GO:0019934 all species →	Biological Process	cGMP-mediated signaling	Interproscan
GO:0070482 all species →	Biological Process	response to oxygen levels	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026632-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026632-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

16.9Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.57	13.53
polyp at pH7 6	18	13	4.02	8.25
coral polyp · control treatment	16	15	4.60	9.66
coral polyp · oil and dispersant treatment	16	15	2.47	6.38
coral polyp · oil treatment	16	15	6.01	16.88
coral polyp · dispersant treatment	16	15	4.04	10.91
Polyp	10	7	1.80	6.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.53
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.74
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.22
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.91
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.