Gene detail

Detailed information of OS493_026633-T1 in Lophelia pertusa

Genomic Location: scaffold_138:803112...808730
NR annotation: KAJ7327754.1, hypothetical protein OS493_026633 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20595	Guanylate cyclase soluble subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Gucy1b1 PE=1 SV=2
O54865	Guanylate cyclase soluble subunit beta-1 OS=Mus musculus OX=10090 GN=Gucy1b1 PE=1 SV=1
P16068	Guanylate cyclase soluble subunit beta-1 OS=Bos taurus OX=9913 GN=GUCY1B1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001319 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07701 all species →	HNOBA	Heme NO binding associated	Domain	Interproscan
PF07700 all species →	HNOB	Haem-NO-binding	Domain	Interproscan
PF00211 all species →	Guanylate_cyc	Adenylate and Guanylate cyclase catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001054 all species →	Domain	Adenylyl cyclase class-3/4/guanylyl cyclase	Interproscan
IPR029787 all species →	Homologous_superfamily	Nucleotide cyclase	Interproscan
IPR011645 all species →	Domain	Haem NO binding associated	Interproscan
IPR011644 all species →	Domain	Heme NO-binding	Interproscan
IPR038158 all species →	Homologous_superfamily	H-NOX domain superfamily	Interproscan
IPR042463 all species →	Homologous_superfamily	Haem NO binding associated domain superfamily	Interproscan
IPR024096 all species →	Homologous_superfamily	NO signalling/Golgi transport ligand-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45655 all species →	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009190 all species →	Biological Process	cyclic nucleotide biosynthetic process	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0004383 all species →	Molecular Function	guanylate cyclase activity	Interproscan
GO:0008074 all species →	Cellular Component	guanylate cyclase complex, soluble	Interproscan
GO:0019934 all species →	Biological Process	cGMP-mediated signaling	Interproscan
GO:0070482 all species →	Biological Process	response to oxygen levels	Interproscan
GO:0006182 all species →	Biological Process	cGMP biosynthetic process	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026633-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026633-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

21.7Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.93	21.71
polyp at pH7 6	18	18	8.49	16.20
coral polyp · control treatment	16	16	5.80	11.04
coral polyp · oil and dispersant treatment	16	15	2.84	7.30
coral polyp · oil treatment	16	16	6.66	17.64
coral polyp · dispersant treatment	16	16	3.96	10.90
Polyp	10	9	3.78	10.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.71
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.12
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.02
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.08
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.53
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.