Gene detail

Detailed information of OS493_026642-T1 in Lophelia pertusa

Genomic Location: scaffold_138:882572...883300
NR annotation: KAJ7327763.1, NTPase, KAP P-loop [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T163	Kinase D-interacting substrate of 220 kDa B OS=Danio rerio OX=7955 GN=kidins220b PE=1 SV=3
Q9EQG6	Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus OX=10116 GN=Kidins220 PE=1 SV=2
Q9ULH0	Kinase D-interacting substrate of 220 kDa OS=Homo sapiens OX=9606 GN=KIDINS220 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002066 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07693 all species →	KAP_NTPase	KAP family P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052771 all species →	Family	Neurotrophin-activated signaling adaptor	Interproscan
IPR011646 all species →	Domain	KAP family P-loop domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24116 all species →	KINASE D-INTERACTING SUBSTRATE OF 220 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019887 all species →	Molecular Function	protein kinase regulator activity	Interproscan
GO:0030165 all species →	Molecular Function	PDZ domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026642-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026642-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

19.4Max TPM

7.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.63	17.51
polyp at pH7 6	18	18	6.45	10.11
coral polyp · control treatment	16	16	11.02	19.35
coral polyp · oil and dispersant treatment	16	16	7.20	11.33
coral polyp · oil treatment	16	16	7.88	14.49
coral polyp · dispersant treatment	16	16	9.24	14.32
Polyp	10	10	3.31	6.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.52
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.11
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.32
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.52
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.61
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.62

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.