Gene detail

Detailed information of OS493_026643-T1 in Lophelia pertusa

Genomic Location: scaffold_138:883354...909610
NR annotation: KAJ7327764.1, NTPase, KAP P-loop [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULH0	Kinase D-interacting substrate of 220 kDa OS=Homo sapiens OX=9606 GN=KIDINS220 PE=1 SV=3
Q7T163	Kinase D-interacting substrate of 220 kDa B OS=Danio rerio OX=7955 GN=kidins220b PE=1 SV=3
Q9EQG6	Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus OX=10116 GN=Kidins220 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002123 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR052771 all species →	Family	Neurotrophin-activated signaling adaptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24116 all species →	KINASE D-INTERACTING SUBSTRATE OF 220 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019887 all species →	Molecular Function	protein kinase regulator activity	Interproscan
GO:0030165 all species →	Molecular Function	PDZ domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026643-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026643-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

19.1Max TPM

6.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.22	11.62
polyp at pH7 6	18	18	5.32	8.12
coral polyp · control treatment	16	16	9.83	19.14
coral polyp · oil and dispersant treatment	16	16	6.37	13.09
coral polyp · oil treatment	16	16	6.66	12.32
coral polyp · dispersant treatment	16	16	7.99	14.30
Polyp	10	8	2.32	5.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.62
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.43
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.23
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.83
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.42
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.94
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.