Gene detail

Detailed information of OS493_026678-T1 in Lophelia pertusa

Genomic Location: scaffold_139:299762...302844
NR annotation: KAJ7390171.1, Atp5hp [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007381 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05873 all species →	Mt_ATP-synt_D	ATP synthase D chain, mitochondrial (ATP5H)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036228 all species →	Homologous_superfamily	ATP synthase, F0 complex, subunit D superfamily, mitochondrial	Interproscan
IPR008689 all species →	Family	ATP synthase, F0 complex, subunit D, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12700 all species →	ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000276 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	Interproscan
GO:0015078 all species →	Molecular Function	proton transmembrane transporter activity	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0000274 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase, stator stalk	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02138	ATPeF0D, ATP5H, ATP7; F-type H+-transporting ATPase subunit d	-	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026678-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,098.3Max TPM

321.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	410.87	652.93
polyp at pH7 6	18	18	401.02	574.42
coral polyp · control treatment	16	16	262.64	687.12
coral polyp · oil and dispersant treatment	16	16	232.61	832.60
coral polyp · oil treatment	16	16	251.97	334.88
coral polyp · dispersant treatment	16	16	156.14	420.83
Polyp	10	10	624.22	1,098.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	652.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	618.53
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	530.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	505.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	474.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	471.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	390.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	379.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	379.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	369.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	366.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	345.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	334.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	324.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	323.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	318.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	315.36
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	296.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	574.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	560.56
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	473.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	443.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	428.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	424.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	420.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	417.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	410.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	403.29
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	375.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	371.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	370.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	352.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	317.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	301.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	298.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	274.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	687.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	383.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	309.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	293.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	282.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	245.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	236.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	235.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	230.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	226.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	221.56
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	188.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	188.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	186.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	168.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	118.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	832.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	277.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	233.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	228.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	219.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	219.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	217.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	198.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	179.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	178.43
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	171.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	157.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	156.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	138.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	334.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	334.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	300.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	289.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	266.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	254.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	251.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	242.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	240.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	230.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	229.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	228.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	221.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	214.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	209.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	185.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	420.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	315.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	185.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	179.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	163.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	156.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	150.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1,098.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	970.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	702.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	582.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	574.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	500.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	487.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	457.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	455.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	413.25

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.