Detailed information of OS493_026705-T1 in Lophelia pertusa

Genomic Location: scaffold_139:535222...544690
NR annotation: KAJ7390195.1, E3 ubiquitin-protein ligase rbbp6 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7Z6E9E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1
P97868E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5
O94264Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP8B7.15c PE=4 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003950 (this species only)
Ubiquitin familyULD|UFD|DWNN · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13696
all species →		zf-CCHC_2Zinc knuckleDomainInterproscan
PF08783
all species →		DWNNDWNN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001878
all species →		DomainZinc finger, CCHC-typeInterproscan
IPR025829
all species →		DomainZinc knuckle CX2CX3GHX4CInterproscan
IPR036875
all species →		Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR014891
all species →		DomainDWNN domainInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15439
all species →		RETINOBLASTOMA-BINDING PROTEIN 6Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_026705-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_026705-T1 global co-expression network
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