Gene detail

Detailed information of OS493_026707-T1 in Lophelia pertusa

Genomic Location: scaffold_139:575485...576645
NR annotation: KAJ7390197.1, hypothetical protein OS493_026707 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIP1	Protein pelota homolog OS=Rattus norvegicus OX=10116 GN=Pelo PE=1 SV=1
Q5RCE3	Protein pelota homolog OS=Pongo abelii OX=9601 GN=PELO PE=2 SV=1
Q7ZWC4	Protein pelota homolog OS=Danio rerio OX=7955 GN=pelo PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003488 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03464 all species →	eRF1_2	eRF1 domain 2	Domain	Interproscan
PF03463 all species →	eRF1_1	eRF1 domain 1	Domain	Interproscan
PF03465 all species →	eRF1_3	eRF1 domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005141 all species →	Domain	eRF1 domain 2	Interproscan
IPR038069 all species →	Homologous_superfamily	Pelota/DOM34, N-terminal domain	Interproscan
IPR005140 all species →	Domain	eRF1 domain 1/Pelota-like	Interproscan
IPR042226 all species →	Homologous_superfamily	eRF1, domain 2 superfamily	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR004405 all species →	Family	Translation release factor pelota	Interproscan
IPR005142 all species →	Domain	eRF1 domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10853 all species →	PELOTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032790 all species →	Biological Process	ribosome disassembly	Interproscan
GO:0070481 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, non-stop decay	Interproscan
GO:0070651 all species →	Biological Process	nonfunctional rRNA decay	Interproscan
GO:0070966 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, no-go decay	Interproscan
GO:0071025 all species →	Biological Process	RNA surveillance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06965	PELO, DOM34, pelA; protein pelota	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026707-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

84.8Max TPM

23.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.40	19.76
polyp at pH7 6	18	18	15.19	21.04
coral polyp · control treatment	16	16	26.05	61.99
coral polyp · oil and dispersant treatment	16	16	38.19	64.90
coral polyp · oil treatment	16	16	19.70	30.10
coral polyp · dispersant treatment	16	16	37.02	84.76
Polyp	10	10	15.76	26.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.81
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.67
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.32
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.15
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.51
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.02
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.37
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.39
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.16
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	23.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.26
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.