Gene detail

Detailed information of OS493_026717-T1 in Lophelia pertusa

Genomic Location: scaffold_139:660112...667840
NR annotation: KAJ7390207.1, hypothetical protein OS493_026717 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N8E3	Centrosomal protein of 112 kDa OS=Homo sapiens OX=9606 GN=CEP112 PE=1 SV=2
Q5PR68	Centrosomal protein of 112 kDa OS=Mus musculus OX=10090 GN=Cep112 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002979 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_026717-T1 in Lophelia pertusa.

InterPro

No InterPro signature was recorded for OS493_026717-T1 in Lophelia pertusa.

PANTHER

PANTHER term	Description	Source
PTHR18871 all species →	CENTROSOMAL PROTEIN OF 112 KDA	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_026717-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026717-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026717-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

29.6Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.86	19.22
polyp at pH7 6	18	18	12.20	18.57
coral polyp · control treatment	16	16	12.03	29.57
coral polyp · oil and dispersant treatment	16	16	8.03	22.99
coral polyp · oil treatment	16	16	9.00	12.40
coral polyp · dispersant treatment	16	16	7.41	12.33
Polyp	10	10	11.98	18.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.01
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.02
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.57
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.64

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.