Gene detail

Detailed information of OS493_026718-T1 in Lophelia pertusa

Genomic Location: scaffold_139:667923...674985
NR annotation: KAJ7390208.1, hypothetical protein OS493_026718 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N8E3	Centrosomal protein of 112 kDa OS=Homo sapiens OX=9606 GN=CEP112 PE=1 SV=2
Q5PR68	Centrosomal protein of 112 kDa OS=Mus musculus OX=10090 GN=Cep112 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002979 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14846 all species →	DUF4485	Domain of unknown function (DUF4485)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027831 all species →	Domain	Domain of unknown function DUF4485	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18871 all species →	CENTROSOMAL PROTEIN OF 112 KDA	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_026718-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026718-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026718-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

26.4Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.84	8.26
polyp at pH7 6	18	17	4.19	7.15
coral polyp · control treatment	16	16	7.34	26.38
coral polyp · oil and dispersant treatment	16	16	5.74	25.96
coral polyp · oil treatment	16	16	4.94	7.88
coral polyp · dispersant treatment	16	15	5.33	10.89
Polyp	10	10	3.15	5.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.73
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.41
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.14
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.