Gene detail

Detailed information of OS493_026747-T1 in Lophelia pertusa

Genomic Location: scaffold_139:932347...942011
NR annotation: KAJ7390235.1, hypothetical protein OS493_026747 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C753	Katanin-interacting protein OS=Mus musculus OX=10090 GN=Katnip PE=1 SV=2
O60303	Katanin-interacting protein OS=Homo sapiens OX=9606 GN=KATNIP PE=1 SV=4
Q5XK85	Protein KATNIP homolog OS=Xenopus laevis OX=8355 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002727 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14652 all species →	DUF4457	Domain of unknown function (DUF4457)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026704 all species →	Family	Katanin-interacting protein	Interproscan
IPR027859 all species →	Domain	KATNIP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21534 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_026747-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026747-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026747-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

40.2Max TPM

19.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.83	32.37
polyp at pH7 6	18	18	18.55	32.65
coral polyp · control treatment	16	16	20.84	40.18
coral polyp · oil and dispersant treatment	16	16	16.10	35.31
coral polyp · oil treatment	16	16	21.85	28.75
coral polyp · dispersant treatment	16	16	14.74	28.01
Polyp	10	10	22.56	34.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.13
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.87
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.53
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.60
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	30.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.13
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.57

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.