Gene detail

Detailed information of OS493_026814-T1 in Lophelia pertusa

Genomic Location: scaffold_140:603666...606806
NR annotation: KAJ7383628.1, Protein transport protein Sec31A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UPL0	Protein transport protein Sec31A OS=Mus musculus OX=10090 GN=Sec31a PE=1 SV=2
Q9Z2Q1	Protein transport protein Sec31A OS=Rattus norvegicus OX=10116 GN=Sec31a PE=1 SV=2
Q5R4F4	Protein transport protein Sec31A OS=Pongo abelii OX=9601 GN=SEC31A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003500 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_026814-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040251 all species →	Family	Protein transport protein SEC31-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13923 all species →	SEC31-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0007029 all species →	Biological Process	endoplasmic reticulum organization	Interproscan
GO:0030127 all species →	Cellular Component	COPII vesicle coat	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110 all species →	Biological Process	COPII-coated vesicle cargo loading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026814-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026814-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

108.6Max TPM

45.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	38.04	51.77
polyp at pH7 6	18	18	47.10	78.35
coral polyp · control treatment	16	16	51.14	64.34
coral polyp · oil and dispersant treatment	16	16	50.17	75.38
coral polyp · oil treatment	16	16	43.09	56.28
coral polyp · dispersant treatment	16	16	37.15	53.57
Polyp	10	10	52.66	108.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.35
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.88
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.94
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.54
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.42
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.44
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.32
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.27
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.02
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.14
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	108.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	85.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	72.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	55.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	45.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	40.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	35.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	31.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	29.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.