Gene detail

Detailed information of OS493_026826-T1 in Lophelia pertusa

Genomic Location: scaffold_140:687616...692341
NR annotation: KAJ7383640.1, Methylosome protein 50 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NUD0	Methylosome protein WDR77 OS=Xenopus laevis OX=8355 GN=wdr77 PE=1 SV=1
Q9BQA1	Methylosome protein WDR77 OS=Homo sapiens OX=9606 GN=WDR77 PE=1 SV=1
Q5RBZ2	Methylosome protein WDR77 OS=Pongo abelii OX=9601 GN=WDR77 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006953 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR052139 all species →	Family	Methylosome Component WDR77	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46853 all species →	METHYLOSOME PROTEIN 50	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0034709 all species →	Cellular Component	methylosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13221	WDR77, MEP50; methylosome protein 50	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026826-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

47.4Max TPM

20.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.92	20.72
polyp at pH7 6	18	18	18.10	37.55
coral polyp · control treatment	16	16	21.21	47.37
coral polyp · oil and dispersant treatment	16	16	26.54	37.38
coral polyp · oil treatment	16	16	22.12	30.09
coral polyp · dispersant treatment	16	16	18.30	30.27
Polyp	10	10	22.04	42.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.35
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.55
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.45
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.25
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.70
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.26
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.61
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.09
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.31
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.25
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.99
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.23
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	42.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.03

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.