Gene detail

Detailed information of OS493_026841-T1 in Lophelia pertusa

Genomic Location: scaffold_140:843701...846423
NR annotation: KAJ7383655.1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002941 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00631 all species →	G-gamma	GGL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001770 all species →	Family	G-protein, gamma subunit	Interproscan
IPR015898 all species →	Domain	G-protein gamma-like domain	Interproscan
IPR036284 all species →	Homologous_superfamily	G-protein gamma-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13809 all species →	GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005834 all species →	Cellular Component	heterotrimeric G-protein complex	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0031681 all species →	Molecular Function	G-protein beta-subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026841-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026841-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

62.3Max TPM

35.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	38.68	58.29
polyp at pH7 6	18	18	44.21	62.35
coral polyp · control treatment	16	16	38.28	61.04
coral polyp · oil and dispersant treatment	16	16	32.81	49.61
coral polyp · oil treatment	16	16	31.67	55.49
coral polyp · dispersant treatment	16	16	28.79	51.05
Polyp	10	10	33.27	54.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.73
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.63
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.54
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.10
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.99
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.31
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.68
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.41
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.81
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.47
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.72
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.27
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.49
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.54
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	54.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	48.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	42.60
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	42.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	27.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	26.61
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.86

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.