Gene detail

Detailed information of OS493_026867-T1 in Lophelia pertusa

Genomic Location: scaffold_141:149819...155609
NR annotation: KAJ7377731.1, hypothetical protein OS493_026867 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VXY7	Equilibrative nucleotide transporter 1 OS=Arabidopsis thaliana OX=3702 GN=ENT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010417 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01733 all species →	Nucleoside_tran	Nucleoside transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002259 all species →	Family	Equilibrative nucleoside transporter	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10332 all species →	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005337 all species →	Molecular Function	nucleoside transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:1901642 all species →	Biological Process	nucleoside transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026867-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026867-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

19.5Max TPM

11.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.13	15.11
polyp at pH7 6	18	18	12.47	17.25
coral polyp · control treatment	16	16	14.01	19.49
coral polyp · oil and dispersant treatment	16	16	12.57	17.87
coral polyp · oil treatment	16	16	11.82	18.15
coral polyp · dispersant treatment	16	16	9.48	14.49
Polyp	10	10	10.52	13.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.51
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.15
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.74
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.88
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.44
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.95
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.