Gene detail

Detailed information of OS493_026870-T1 in Lophelia pertusa

Genomic Location: scaffold_141:266753...269593
NR annotation: KAJ7377734.1, hypothetical protein OS493_026870 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q56H28	Angiotensin-converting enzyme 2 OS=Felis catus OX=9685 GN=ACE2 PE=1 SV=1
P12821	Angiotensin-converting enzyme OS=Homo sapiens OX=9606 GN=ACE PE=1 SV=1
Q56NL1	Angiotensin-converting enzyme 2 OS=Paguma larvata OX=9675 GN=ACE2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000977 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01401 all species →	Peptidase_M2	Angiotensin-converting enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001548 all species →	Family	Peptidase M2, peptidyl-dipeptidase A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10514 all species →	ANGIOTENSIN-CONVERTING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008241 all species →	Molecular Function	peptidyl-dipeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026870-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026870-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

54.8Max TPM

8.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	8.70	17.66
polyp at pH7 6	18	16	7.38	14.60
coral polyp · control treatment	16	16	9.93	18.10
coral polyp · oil and dispersant treatment	16	14	5.85	19.99
coral polyp · oil treatment	16	16	11.43	30.50
coral polyp · dispersant treatment	16	16	11.94	54.78
Polyp	10	9	6.08	19.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.32
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.60
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.96
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.10
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.37
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.29
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.59
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.02
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.47
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.37
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.