Gene detail

Detailed information of OS493_026872-T1 in Lophelia pertusa

Genomic Location: scaffold_141:292901...301718
NR annotation: KAJ7377736.1, hypothetical protein OS493_026872 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10751	Angiotensin-converting enzyme OS=Gallus gallus OX=9031 GN=ACE PE=2 SV=2
P47820	Angiotensin-converting enzyme OS=Rattus norvegicus OX=10116 GN=Ace PE=1 SV=1
P09470	Angiotensin-converting enzyme OS=Mus musculus OX=10090 GN=Ace PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000977 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01401 all species →	Peptidase_M2	Angiotensin-converting enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001548 all species →	Family	Peptidase M2, peptidyl-dipeptidase A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10514 all species →	ANGIOTENSIN-CONVERTING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008241 all species →	Molecular Function	peptidyl-dipeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01283	ACE, CD143; peptidyl-dipeptidase A	EC:3.4.15.1	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026872-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

183.8Max TPM

61.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	91.51	128.23
polyp at pH7 6	18	18	96.32	183.78
coral polyp · control treatment	16	16	50.41	128.96
coral polyp · oil and dispersant treatment	16	16	47.66	156.34
coral polyp · oil treatment	16	16	51.05	111.43
coral polyp · dispersant treatment	16	16	45.22	138.51
Polyp	10	10	31.25	112.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	128.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	118.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	183.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	164.47
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	150.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	147.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	100.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.98
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.90
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	156.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	144.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.88
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.05
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.71
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.42
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	138.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.57
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	112.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	50.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	41.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.86

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.