Gene detail

Detailed information of OS493_026890-T1 in Lophelia pertusa

Genomic Location: scaffold_141:594928...608978
NR annotation: KAJ7377754.1, hypothetical protein OS493_026890 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K245	UV radiation resistance-associated protein OS=Mus musculus OX=10090 GN=Uvrag PE=1 SV=2
Q9P2Y5	UV radiation resistance-associated gene protein OS=Homo sapiens OX=9606 GN=UVRAG PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005894 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10186 all species →	ATG14	Vacuolar sorting 38 and autophagy-related subunit 14	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018791 all species →	Family	UV radiation resistance protein/autophagy-related protein 14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15157 all species →	UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0000323 all species →	Cellular Component	lytic vacuole	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0035493 all species →	Biological Process	SNARE complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21249	UVRAG; UV radiation resistance-associated gene protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026890-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

16.7Max TPM

9.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.40	14.97
polyp at pH7 6	18	18	9.39	15.20
coral polyp · control treatment	16	16	10.90	16.67
coral polyp · oil and dispersant treatment	16	16	9.64	12.68
coral polyp · oil treatment	16	16	10.01	14.27
coral polyp · dispersant treatment	16	16	8.64	14.72
Polyp	10	10	4.97	8.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.42
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.67
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.89
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.24
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.78
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.08
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.05
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.