Gene detail

Detailed information of OS493_026891-T1 in Lophelia pertusa

Genomic Location: scaffold_141:611713...630126
NR annotation: KAJ7377755.1, Mediator of RNA polymerase II transcription subunit 14 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60244	Mediator of RNA polymerase II transcription subunit 14 OS=Homo sapiens OX=9606 GN=MED14 PE=1 SV=2
A2ABV5	Mediator of RNA polymerase II transcription subunit 14 OS=Mus musculus OX=10090 GN=Med14 PE=1 SV=1
Q16U49	Mediator of RNA polymerase II transcription subunit 14 OS=Aedes aegypti OX=7159 GN=MED14 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002883 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08638 all species →	Med14	Mediator complex subunit MED14	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013947 all species →	Family	Mediator complex, subunit Med14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12809 all species →	MEDIATOR COMPLEX SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0070847 all species →	Cellular Component	core mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026891-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026891-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

23.1Max TPM

12.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.39	18.46
polyp at pH7 6	18	18	11.06	14.50
coral polyp · control treatment	16	16	15.66	22.47
coral polyp · oil and dispersant treatment	16	16	12.75	18.89
coral polyp · oil treatment	16	16	12.99	19.41
coral polyp · dispersant treatment	16	16	14.60	23.10
Polyp	10	9	6.64	10.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.04
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.43
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.94
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.74
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.40
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.54
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.49
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.60
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.49
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.33
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.12
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.