Gene detail

Detailed information of OS493_026892-T1 in Lophelia pertusa

Genomic Location: scaffold_141:630158...637161
NR annotation: KAJ7377756.1, Mediator of RNA polymerase II transcription subunit 14 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29FF7	Mediator of RNA polymerase II transcription subunit 14 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=MED14 PE=3 SV=2
Q9W0P8	Mediator of RNA polymerase II transcription subunit 14 OS=Drosophila melanogaster OX=7227 GN=MED14 PE=1 SV=4
Q16U49	Mediator of RNA polymerase II transcription subunit 14 OS=Aedes aegypti OX=7159 GN=MED14 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002929 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_026892-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013947 all species →	Family	Mediator complex, subunit Med14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12809 all species →	MEDIATOR COMPLEX SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0070847 all species →	Cellular Component	core mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026892-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026892-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

25.5Max TPM

11.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	10.49	20.26
polyp at pH7 6	18	18	9.51	15.29
coral polyp · control treatment	16	16	14.39	25.53
coral polyp · oil and dispersant treatment	16	16	12.26	24.10
coral polyp · oil treatment	16	16	12.47	25.22
coral polyp · dispersant treatment	16	16	12.08	22.38
Polyp	10	9	6.94	9.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.52
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.97
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.09
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.24
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.