Gene detail

Detailed information of OS493_026893-T1 in Lophelia pertusa

Genomic Location: scaffold_141:639093...645738
NR annotation: KAJ7377757.1, Mediator of RNA polymerase II transcription subunit 14 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60244	Mediator of RNA polymerase II transcription subunit 14 OS=Homo sapiens OX=9606 GN=MED14 PE=1 SV=2
A2ABV5	Mediator of RNA polymerase II transcription subunit 14 OS=Mus musculus OX=10090 GN=Med14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002929 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_026893-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013947 all species →	Family	Mediator complex, subunit Med14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12809 all species →	MEDIATOR COMPLEX SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0070847 all species →	Cellular Component	core mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026893-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026893-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

61.4Max TPM

26.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	22.70	49.26
polyp at pH7 6	18	17	20.01	36.85
coral polyp · control treatment	16	16	33.87	54.11
coral polyp · oil and dispersant treatment	16	16	29.08	56.89
coral polyp · oil treatment	16	16	34.92	61.44
coral polyp · dispersant treatment	16	16	26.12	59.11
Polyp	10	10	21.04	30.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.94
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.73
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.38
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	30.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	30.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	24.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.