Gene detail

Detailed information of OS493_026905-T1 in Lophelia pertusa

Genomic Location: scaffold_141:868327...870253
NR annotation: KAJ7377769.1, hypothetical protein OS493_026905 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10751	Angiotensin-converting enzyme OS=Gallus gallus OX=9031 GN=ACE PE=2 SV=2
P12822	Angiotensin-converting enzyme OS=Oryctolagus cuniculus OX=9986 GN=ACE PE=1 SV=3
F1RRW5	Angiotensin-converting enzyme OS=Sus scrofa OX=9823 GN=ACE PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000977 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01401 all species →	Peptidase_M2	Angiotensin-converting enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001548 all species →	Family	Peptidase M2, peptidyl-dipeptidase A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10514 all species →	ANGIOTENSIN-CONVERTING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008241 all species →	Molecular Function	peptidyl-dipeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026905-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026905-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

80.6Max TPM

17.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.01	80.58
polyp at pH7 6	18	18	19.90	46.10
coral polyp · control treatment	16	16	18.18	33.05
coral polyp · oil and dispersant treatment	16	16	11.56	41.01
coral polyp · oil treatment	16	16	20.27	51.09
coral polyp · dispersant treatment	16	16	13.18	25.53
Polyp	10	10	14.24	50.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.62
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.10
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.66
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.51
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.86
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.59
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.09
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.75
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.53
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.15
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	50.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.31
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.19
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.