Gene detail

Detailed information of OS493_026908-T1 in Lophelia pertusa

Genomic Location: scaffold_141:956531...958894
NR annotation: KAJ7377772.1, hypothetical protein OS493_026908 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10751	Angiotensin-converting enzyme OS=Gallus gallus OX=9031 GN=ACE PE=2 SV=2
F1RRW5	Angiotensin-converting enzyme OS=Sus scrofa OX=9823 GN=ACE PE=1 SV=3
P12822	Angiotensin-converting enzyme OS=Oryctolagus cuniculus OX=9986 GN=ACE PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000977 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01401 all species →	Peptidase_M2	Angiotensin-converting enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001548 all species →	Family	Peptidase M2, peptidyl-dipeptidase A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10514 all species →	ANGIOTENSIN-CONVERTING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008241 all species →	Molecular Function	peptidyl-dipeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026908-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026908-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

93.5Max TPM

34.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	40.34	80.77
polyp at pH7 6	18	18	39.60	72.34
coral polyp · control treatment	16	16	34.41	78.42
coral polyp · oil and dispersant treatment	16	16	30.54	93.48
coral polyp · oil treatment	16	16	40.17	76.56
coral polyp · dispersant treatment	16	16	28.26	67.68
Polyp	10	10	27.04	67.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.19
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.73
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.82
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.42
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.34
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.31
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.61
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	67.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	57.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	56.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.21

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.