Gene detail

Detailed information of OS493_026960-T1 in Lophelia pertusa

Genomic Location: scaffold_142:849097...860510
NR annotation: KAJ7371315.1, hypothetical protein OS493_026960 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58EB4	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio OX=7955 GN=hibch PE=2 SV=1
A2VDC2	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis OX=8355 GN=hibch PE=2 SV=1
Q28FR6	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis OX=8364 GN=hibch PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003622 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16113 all species →	ECH_2	Enoyl-CoA hydratase/isomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR045004 all species →	Domain	Enoyl-CoA hydratase/isomerase domain	Interproscan
IPR032259 all species →	Family	Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43176 all species →	3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003860 all species →	Molecular Function	3-hydroxyisobutyryl-CoA hydrolase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006574 all species →	Biological Process	valine catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_026960-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026960-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

13.6Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.39	5.73
polyp at pH7 6	18	15	3.47	7.53
coral polyp · control treatment	16	16	6.74	13.59
coral polyp · oil and dispersant treatment	16	16	5.21	11.16
coral polyp · oil treatment	16	16	6.54	12.74
coral polyp · dispersant treatment	16	16	4.48	10.87
Polyp	10	9	3.51	6.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.42
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.10
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.31
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.99
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.07
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.